Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015879984.1_cds_XP_016437365.1_33132
CDS Infomation

[gene=LOC107763385] [db_xref=GeneID:107763385] [protein=probable 28S rRNA (cytosine-C(5))-methyltransferase] [protein_id=XP_016437365.1] [location=join(73742..74009,74111..74286,74388..74451,74534..74667,74777..74860,74948..75022,75156..75227,75319..75392,76058..76110,76818..76927,77194..77262,77337..77411,78071..78163,78278..78357,78443..78542,79158..79492,79596..79659)] [gbkey=CDS]
Sequence

ATGGCTGGTCCCAAACTCGGTAAGAAAACGGGTTCTAAATTAGGAAAAGCCCCTACCAAG
AAGAAGCAAAAAAAGGAACCTCTGCCGCCTAAGCCACTTGAAAAGGAAGATCTTTTTATT
AGTGACGGTGAAGGAACAGATGGGGATTTTGAAGAAGATGATGGAGGTTTTGGTGATGAA
GAACAACAGGAAATGAACTCAGATTCTGACATGTCTTCTGACTTGGACGACCCCTTTGCT
GCTGATATATTAGCAAGTGGTGATGCTGATGATGGTTCAGCAGATTCGGATGTAGATTCT
GATTCAGATGCAGATGATACTGATCCTGTAAGGAAGTCAAAAGCTATTGATGAAGAAAGG
GAAAGAGTAAAGGAGGACGCCGAAGCAGAATTGCAGCTCAATATTAAGGAAGAAGCTGAT
GAGTTCAGACTGCCAACAACTGAGGAGCTTGAAGAAGAAACACATAGACCCCCGGATCTC
TCTAATCTCCAAAGGAGGATAAAAGAGATTGTTCGAGTGCTTTCAAATTTTAAGACATTG
AGGCAAGAGGGTGTGACACGGAAGGATTATGTTGATCAACTTAAAAGGGACTTGGGTTCA
TATTATGGATACAATGATTTTCTGATTGAGGTGTTAGTGGAGATGTTTCCCCCTGTTGAG
CTGATTGAACTTATTGAAGCATTTGAAAAGCCCCGCCCGATTTCTCTACGGACAAACACT
TTAAAGACTCGCAGACGGGATTTAGCTGGTGTTCTTCTGAACAGAGGTGTCAATTTGGAC
CCGTTAAGCAAATGGTCAAAGGTTGGACTAGTTGTGTACGATTCTCAAGTACCAGTTGGT
GCCACTCCTGAGTATATGGCTGGTCATTACATGCTCCAAAGTGCGAGCTCTTTTCTGCCC
GTAATGGCCCTTGCCCCTCAGGAGAATGAGCGTGTTGTTGATATGGCTGCTGCTCCTGGA
GGCAAAACAACTTATGTTGCTGCACTGATGAAAAATAGTGGTATTATTTATGCAAATGAG
ATGAAGGAGTCAAGGCTTAAATCGCTCACTGCTAATTTACATCGTATGGGGGTAACAAAC
ACCATTGTGTGTAACTATGATGGAAGAGAGCTGCCTAAAGTTTTGGGTCAGAATACTGCT
GATAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTAATCTCGAAGGATGAGTCT
GTTAAAACTTCCAAAAATGCTGCTGATATACAAAATTGCTCACAGCTGCAGAAGGAACTG
ATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAATCAGGTGGATACATAGTGTAT
TCTACCTGCTCCATTATGGTTGACGAGAATGAAGCAGTTATAGACTATGCACTTAAGAAG
AGAGATGTTAAACTTGTGCCATGTGGACTTGATTTTGGGAGGCCTGGATTTATTCGCTTT
AGGCAGCACCGTTTCCACACATCTTTGGACAAGACTAGGCGATTCTATCCTCATGTTCAC
AACATGGATGGATTCTTTGTAGCCAAGTTGAAAAAGATGAGCAATTCCAAGTCTGCTGCA
AAATCGTCGGTTCAATCTGACGAAACACAAGATGCTGAAACCATTGAGAGCAGTGACCAG
CAGAACGCTGAAGGGGATGACAAGCATTCAGAGCAAAAGGGGATTGCAAAAGAGAATGGG
AATAATGAAGAAGTGGCGGGTGATAAAAAGAGGAAGAGGGATGTCCAAAAGCATTCAGAT
AAGAAAGGTGTTGGACAACACGGTGGTGTAACTAAAAATGGGAAGGCAGAAAACCAATCG
GTGGCGACAAAAAGGAGGGAAAAGAAGAAACCCCCTCCTAGAGAGGAAATTGCAAAAGCT
AGGGAAGAGAAGAGGAAAGCTCTTAGGGAAGCAAAACGAAAAGCAACAATGAAGAACAAA
GCTTGA

Peptide Sequence

PEP ID

XP_016437365.1
PEP Infomation

PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase [Nicotiana tabacum]
Sequence

MAGPKLGKKTGSKLGKAPTKKKQKKEPLPPKPLEKEDLFISDGEGTDGDFEEDDGGFGDE
EQQEMNSDSDMSSDLDDPFAADILASGDADDGSADSDVDSDSDADDTDPVRKSKAIDEER
ERVKEDAEAELQLNIKEEADEFRLPTTEELEEETHRPPDLSNLQRRIKEIVRVLSNFKTL
RQEGVTRKDYVDQLKRDLGSYYGYNDFLIEVLVEMFPPVELIELIEAFEKPRPISLRTNT
LKTRRRDLAGVLLNRGVNLDPLSKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLP
VMALAPQENERVVDMAAAPGGKTTYVAALMKNSGIIYANEMKESRLKSLTANLHRMGVTN
TIVCNYDGRELPKVLGQNTADRILLDAPCSGTGVISKDESVKTSKNAADIQNCSQLQKEL
ILAAIDMVDANSKSGGYIVYSTCSIMVDENEAVIDYALKKRDVKLVPCGLDFGRPGFIRF
RQHRFHTSLDKTRRFYPHVHNMDGFFVAKLKKMSNSKSAAKSSVQSDETQDAETIESSDQ
QNAEGDDKHSEQKGIAKENGNNEEVAGDKKRKRDVQKHSDKKGVGQHGGVTKNGKAENQS
VATKRREKKKPPPREEIAKAREEKRKALREAKRKATMKNKA

Transcript Sequence

Gene sequence data has not been registered.